Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs2381438 | chr9:6342855 | A/G | 1.44E-5 | 216 | 9.1 | 13 | 3.3 | KM Plot |
| BLCA | rs2385544 | chr8:50767020 | A/C | 2.43E-5 | 216 | 10.53 | 9.05 | 1.87 | KM Plot |
| BLCA | rs2449958 | chr8:50829059 | T/G | 1.59E-5 | 216 | 10.53 | 9.03 | 0.98 | KM Plot |
| BLCA | rs2450288 | chr8:50829073 | T/C | 1.59E-5 | 216 | 10.53 | 9.03 | 0.98 | KM Plot |
| BLCA | rs2450291 | chr8:50820849 | C/T | 2.44E-5 | 216 | 10.13 | 9.25 | 1.87 | KM Plot |
| BLCA | rs2628417 | chr8:50845377 | C/T | 1.59E-5 | 216 | 0.98 | 9.03 | 10.53 | KM Plot |
| BLCA | rs2630550 | chr8:50852131 | C/G | 2.87E-5 | 214 | 1.87 | 9.05 | 10.13 | KM Plot |
| BLCA | rs2632067 | chr11:19462524 | A/G | 4.44E-6 | 216 | 4.07 | 5.77 | 10.6 | KM Plot |
| BLCA | rs28577171 | chr16:523433 | A/G | 2.72E-8 | 211 | 10.1 | 6.68 | 2.12 | KM Plot |
| BLCA | rs28678897 | chr16:527485 | G/A | 2.69E-8 | 211 | 10.53 | 6.68 | 2.12 | KM Plot |
| BLCA | rs28999384 | chr17:26104823 | C/T | 2.58E-7 | 210 | 9.1 | 9.8 | 6.08 | KM Plot |
| BLCA | rs28999385 | chr17:26104732 | G/T | 2.58E-7 | 210 | 9.1 | 9.8 | 6.08 | KM Plot |
| BLCA | rs28999387 | chr17:26104286 | C/T | 3.78E-9 | 214 | 9.1 | 10.23 | 4.73 | KM Plot |
| BLCA | rs2904967 | chr11:65091609 | G/A | 0 | 215 | 9.03 | 12.37 | 2.73 | KM Plot |
| BLCA | rs2904981 | chr11:65003026 | C/T | 2.52E-8 | 215 | 4.22 | 12.7 | 8.7 | KM Plot |